LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-133a-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127169-127193
0.018
14
8mer
151538-151548
0.012
2
7mer
146805-146826
0.008
3
8mer
264303-264326
0.007
1
7mer
9319-9341
0.007
3
7mer
10672-10677
0.006
2
7mer
93982-93998
0.006
7
7mer
180572-180587
0.006
3
9mer
82307-82333
0.006
0
8mer
111688-111700
0.006
1
7mer
236746-236755
0.006
1
8mer
131470-131491
0.006
0
7mer
119088-119107
0.005
7
7mer
235431-235453
0.005
1
7mer
78958-78963
0.005
1
7mer
251465-251488
0.004
0
7mer
136163-136186
0.004
4
7mer
262605-262627
0.004
1
8mer
204988-205009
0.004
1
7mer
189527-189547
0.004
2
7mer
55861-55882
0.003
1
7mer
88995-89014
0.003
1
6mer
81369-81373
0.003
8
7mer
64761-64786
0.003
2
8mer
213586-213601
0.003
0
7mer
140201-140220
0.003
1
8mer+wobble
98491-98510
0.003
2
6mer
210617-210640
0.003
3
7mer
186068-186089
0.002
Not Conserved
6mer
186497-186512
0.002
4
6mer
166558-166580
0.002
4
6mer
147914-147918
0.002
0
6mer
108103-108123
0.002
3
6mer
58885-58902
0.002
3
6mer
125887-125891
0.002
1
6mer
76589-76608
0.002
1
6mer
243891-243917
0.002
1
6mer
45146-45150
0.002
0
6mer
232569-232591
0.002
0
6mer
190672-190699
0.002
1
6mer
2558-2574
0.002
3
6mer
177903-177925
0.002
1
6mer
87303-87319
0.002
2
6mer
114996-115000
0.002
0
6mer
41076-41094
0.002
3
6mer
168523-168547
0.002
1
6mer
230724-230735
0.002
0
6mer
159041-159045
0.002
1
6mer
199723-199740
0.002
3
6mer
54326-54339
0.002
1
6mer
29458-29462
0.002
0
6mer
168087-168091
0.002
0
6mer
3270-3296
0.002
3
6mer
121030-121043
0.002
1
6mer
116027-116048
0.002
1
6mer
164300-164323
0.002
0
6mer
63344-63360
0.002
3
6mer
230488-230506
0.002
0
6mer
221425-221433
0.002
1
6mer
151170-151194
0.002
0
6mer
83419-83434
0.002
1
6mer
130787-130800
0.002
3
6mer
244266-244285
0.002
0
6mer
261628-261650
0.002
1
6mer
163991-163995
0.002
1
6mer
162458-162472
0.002
1
6mer
236433-236451
0.002
1
6mer
21258-21273
0.002
1
6mer
89827-89835
0.002
1
6mer
142332-142357
0.002
1
6mer
248974-248987
0.002
0
6mer
176633-176657
0.002
4
6mer
229116-229137
0.002
1
6mer
8929-8933
0.002
0
6mer
184500-184524
0.002
0
6mer
229785-229811
0.002
0
6mer
246321-246334
0.002
0
6mer
75625-75649
0.002
1
6mer
63881-63893
0.001
0
6mer
182514-182540
0.001
4
6mer
184968-184994
0.001
1
6mer
11199-11222
0.001
0
6mer
66217-66243
0.001
0
6mer
220240-220260
0.001
Not Conserved
6mer
133635-133650
0.001
2
6mer
192527-192551
0.001
1
6mer
220610-220627
0.001
1
7mer
218158-218184
0.001
0
6mer
23421-23448
0.001
1
6mer
78513-78536
0.001
0
6mer
85607-85631
0.001
1
6mer
197620-197635
0.001
1
6mer
250953-250977
0.001
0
6mer
196654-196674
0.001
1
6mer
185139-185162
0.001
1
6mer
55286-55299
0.001
1
6mer
242533-242544
0.001
1
6mer
109532-109551
0.001
1
6mer
87406-87418
0.001
3
6mer
189704-189724
0.001
0
6mer
231709-231729
0.001
0
6mer
157289-157310
0.001
1
6mer
150291-150307
0.001
2
6mer
82830-82851
0.001
1
6mer
25498-25523
0.001
1
6mer
98621-98640
0.001
1
6mer
226779-226800
0.001
0
6mer
57422-57448
0.001
1
6mer
189388-189415
0.001
1
6mer
32821-32848
0.001
0
6mer
109896-109921
0.001
0
6mer
25769-25792
0.001
1
6mer
98215-98227
0.001
0
6mer
229208-229232
0.001
0
6mer
114370-114394
0.001
0
6mer
260181-260208
0.001
1
6mer
109564-109586
0.001
Not Conserved
6mer
118872-118898
0.001
2
6mer
228544-228562
0.001
0
6mer
185199-185203
0.001
1
6mer
251897-251918
0.001
0
6mer
229819-229844
0.001
0
6mer
177433-177451
0.001
0
6mer
79021-79048
0.001
0
XLOC_000371
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001130
Biotype: transcript isomorph
Gene id: XLOC_000371
Gene Name: XLOC_000371
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
124-144
0.228
1
RP11-363G2.4
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-100
0.177
0
7mer
41-55
0.038
0
BACE2-IT1
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433378
Biotype: antisense
Gene id: ENSG00000224388
Gene Name: BACE2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-375
0.206
1
XLOC_000620
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002260
Biotype: transcript isomorph
Gene id: XLOC_000620
Gene Name: XLOC_000620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
68-89
0.041
1
7mer
92-113
0.040
1
7mer
44-65
0.040
1
6mer
1030-1053
0.019
1
7mer
26-41
0.017
0
6mer
549-567
0.015
1
6mer
827-849
0.012
1
KCNQ1OT1
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1727-1746
0.007
0
7mer
69406-69422
0.007
2
7mer
30539-30563
0.007
0
7mer
6197-6205
0.006
1
7mer
9823-9828
0.006
1
7mer
32680-32701
0.006
0
7mer
7744-7749
0.004
Not Conserved
7mer
89842-89864
0.004
1
8mer
62802-62820
0.004
1
6mer
43866-43888
0.003
6
6mer
48564-48568
0.003
3
6mer
51209-51225
0.002
1
6mer
2128-2155
0.002
1
6mer
17572-17598
0.002
1
6mer
89166-89170
0.002
1
6mer
38560-38584
0.002
0
6mer
8018-8040
0.002
1
6mer
4258-4274
0.002
1
6mer
13910-13933
0.002
1
6mer
40986-40990
0.002
0
6mer
6398-6415
0.002
1
6mer
28545-28566
0.002
0
6mer
15750-15764
0.002
1
6mer
26901-26905
0.002
0
6mer
48819-48842
0.002
2
6mer
13245-13259
0.002
1
6mer
19400-19423
0.002
0
6mer
10857-10878
0.002
1
6mer
72575-72588
0.002
1
6mer
59956-59981
0.002
1
6mer
25803-25807
0.002
0
6mer
40715-40724
0.002
0
6mer
30301-30316
0.002
0
6mer
58474-58490
0.002
1
6mer
35152-35168
0.002
0
6mer
39267-39293
0.002
0
6mer
35562-35584
0.002
Not Conserved
6mer
12589-12593
0.002
0
7mer
31026-31031
0.002
0
6mer
27245-27261
0.002
0
6mer
11786-11804
0.002
1
6mer
13728-13749
0.002
1
6mer
69128-69151
0.002
1
6mer
31061-31081
0.002
0
6mer
85687-85712
0.001
1
6mer
26103-26122
0.001
0
6mer
25427-25439
0.001
0
6mer
51762-51787
0.001
2
6mer
34596-34613
0.001
Not Conserved
6mer
16136-16157
0.001
0
6mer
36427-36452
0.001
0
6mer
12093-12117
0.001
0
6mer
18141-18167
0.001
1
6mer
70052-70078
0.001
0
6mer
34851-34866
0.001
0
6mer
34005-34024
0.001
0
6mer
33654-33676
0.001
0
6mer
45950-45964
0.001
1
6mer
55278-55299
0.001
1
6mer
17788-17812
0.001
1
6mer
57386-57404
0.001
1
6mer
35051-35076
0.001
0
6mer
28346-28365
0.001
0
6mer
39161-39177
0.001
0
6mer
7684-7707
0.001
1
6mer
28498-28502
0.001
0
6mer
32523-32547
0.001
0
6mer
7628-7644
0.001
1
6mer
35866-35887
0.001
Not Conserved
6mer
75860-75880
0.001
1
6mer
28305-28309
0.001
0
6mer
25389-25403
0.001
1
6mer
27206-27232
0.001
0
6mer
35010-35014
0.001
0
6mer
9748-9773
0.001
1
RP11-277P12.9
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535911
Biotype: lincRNA
Gene id: ENSG00000256155
Gene Name: RP11-277P12.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-442
0.149
0
RP5-857K21.1
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417636
Biotype: lincRNA
Gene id: ENSG00000231709
Gene Name: RP5-857K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
501-517
0.147
0
SENP3-EIF4A1
hsa-miR-133a-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037926.1
Biotype: sense
Gene id: NR_037926.1 (gene)
Gene Name: SENP3-EIF4A1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3468-3487
0.064
8
8mer
4113-4133
0.051
6
8mer
1601-1621
0.021
9
6mer
3213-3237
0.004
10
6mer
2212-2236
0.001
1
RP11-244B22.11
hsa-miR-133a-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565523
Biotype: lincRNA
Gene id: ENSG00000261800
Gene Name: RP11-244B22.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-360
0.102
0
6mer
383-404
0.014
0
XLOC_006439
hsa-miR-133a-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013799
Biotype: transcript isomorph
Gene id: XLOC_006439
Gene Name: XLOC_006439
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-26
0.094
1
8mer
362-387
0.021
1
RP11-229P13.25
hsa-miR-133a-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000569497
Biotype: sense_overlapping
Gene id: ENSG00000260190
Gene Name: RP11-229P13.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-506
0.034
1
7mer
416-443
0.027
1
7mer
286-309
0.016
0
7mer
351-378
0.014
0
6mer
401-424
0.013
1
6mer
336-359
0.006
0
6mer
623-645
0.005
0
DPH6-AS1
hsa-miR-133a-3p
0.998
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560866
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
197-216
0.110
6
RP11-691G17.1
hsa-miR-133a-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2557-2578
0.057
1
6mer
718-722
0.012
1
6mer
2069-2090
0.010
1
6mer
1076-1090
0.008
1
6mer
2160-2171
0.006
0
6mer
1037-1063
0.005
1
6mer
1406-1431
0.003
0
RP11-324D17.2
hsa-miR-133a-3p
0.996
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000557953
Biotype: lincRNA
Gene id: ENSG00000259759
Gene Name: RP11-324D17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-340
0.100
6
AC004447.2
hsa-miR-133a-3p
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594142
Biotype: antisense
Gene id: ENSG00000269131
Gene Name: AC004447.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-137
0.099
5
XLOC_003604
hsa-miR-133a-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008156
Biotype: transcript isomorph
Gene id: XLOC_003604
Gene Name: XLOC_003604
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-91
0.028
1
7mer
46-67
0.027
1
7mer
22-43
0.023
1
6mer
427-445
0.009
1
6mer
894-898
0.008
0
XLOC_005906
hsa-miR-133a-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011606
Biotype: transcript isomorph
Gene id: XLOC_005906
Gene Name: XLOC_005906
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
881-899
0.045
0
6mer
48-74
0.023
0
6mer
1020-1024
0.016
0
6mer
428-432
0.010
0
LINC01249
hsa-miR-133a-3p
0.994
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412134
Biotype: lincRNA
Gene id: ENSG00000231532
Gene Name: LINC01249
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
905-928
0.081
9
6mer
2402-2426
0.005
3
6mer
2429-2442
0.004
0
6mer
2088-2109
0.003
1
DPH6-AS1
hsa-miR-133a-3p
0.993
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559210
Biotype: lincRNA
Gene id: ENSG00000248079
Gene Name: DPH6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-133a-3p
Sequence: uuugguccccuucaaccagcug
MirBase ID: MIMAT0000427
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
319-338
0.092
6
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